PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004513721.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MIKC_MADS
Protein Properties Length: 241aa    MW: 27878.4 Da    PI: 9.481
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004513721.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.46e-312574150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fs++g+lyey+
  XP_004513721.1 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYA 74
                    79***********************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.7961777IPR002100Transcription factor, MADS-box
SMARTSM004323.9E-411776IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.1E-321893IPR002100Transcription factor, MADS-box
CDDcd002652.39E-431891No hitNo description
PROSITE patternPS0035001973IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-321939IPR002100Transcription factor, MADS-box
PfamPF003192.2E-262673IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-323954IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-325475IPR002100Transcription factor, MADS-box
PfamPF014863.9E-25100187IPR002487Transcription factor, K-box
PROSITE profilePS5129714.522103193IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0090376Biological Processseed trichome differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MELPNHEDGE GSSQKKMGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA  60
LVVFSTRGRL YEYANNSVRA TIERYKKACS ATTNAESVSE ANTQFYQQES SKLRRQIRDI  120
QNLNRHILGE ALGSLSLKEL KNLEGRLEKG LSRVRSRKHE TLFADVEFMQ KREIDLQNQN  180
NYLRAKIAEC ERAQQQQQNM MPETYSESLP SQSYDRNFFP VNLLGSDQQY SRQDQTALQL  240
V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-201785169Myocyte-specific enhancer factor 2B
1tqe_Q2e-201785169Myocyte-specific enhancer factor 2B
1tqe_R2e-201785169Myocyte-specific enhancer factor 2B
1tqe_S2e-201785169Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX2975660.0JX297566.1 Medicago monspeliaca voucher PI 641560 shatterproof mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004513719.11e-179PREDICTED: agamous-like MADS-box protein AGL1 isoform X1
RefseqXP_004513720.11e-179PREDICTED: agamous-like MADS-box protein AGL1 isoform X1
RefseqXP_004513721.11e-179PREDICTED: agamous-like MADS-box protein AGL1 isoform X1
SwissprotP293811e-119AGL1_ARATH; Agamous-like MADS-box protein AGL1
TrEMBLQ56NI21e-164Q56NI2_PEA; MADS box protein M8
STRINGGLYMA14G03100.11e-147(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.11e-120MIKC_MADS family protein